- Class: 3
- Architecture: 3.40:3-Layer(aba) Sandwich
- Topology: 3.40.50:Rossmann fold
- Homology: 3.40.50.280:Cobalamin-binding domain
PDB Entries
PDB ID | OPM | Mutant | Chain Formula | Resolution | HETNAM | |||
---|---|---|---|---|---|---|---|---|
Amino Acid sequence | SCOPe Family Level | CATH Homology Level | ||||||
1b1a | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1be1 | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1bmt | [A2] | [A2] | [A2] | 3 | COB:CO-METHYLCOBALAMIN | |||
1cb7 | [A2B2] | [A2B2] | [A2B2] | 2 | COB:CO-METHYLCOBALAMIN TAR:D(-)-TARTARIC ACID | |||
1ccw | [A2B2] | [A2B2] | [A2B2] | 1.6 | CNC:CYANOCOBALAMIN TAR:D(-)-TARTARIC ACID | |||
1e1c | [AB] | [A2] | [A2] | 2.62 | B12:COBALAMIN DCA:DESULFO-COENZYME A | |||
1fmf | [A] | [A] | [A] | NOTAPPLICABLE. | ||||
1i9c | [A2B2] | [A2B2] | [A2B2] | 1.9 | 2AS:(2S,3S)-3-METHYL-ASPARTIC ACID 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN GLU:GLUTAMIC ACID | |||
1id8 | [A] | [A] | [A] | NOTAPPLICABLE. | DBI:PHOSPHORIC ACID MONO-[5-(5,6-DIMETHYL-BENZOIMIDAZOL-1-YL)-4-HYDROXY-2-HYDROXYMETHYL-TETRAHYDRO-FURAN-3-YL]ESTER FOP:2-HYDROXY-PROPYL-AMMONIUM | |||
1k7y | [A] | [A] | [A] | 3 | B12:COBALAMIN SO4:SULFATE ION | |||
1k98 | [A] | [A] | [A] | 3.75 | B12:COBALAMIN SO4:SULFATE ION | |||
1req | [AB] | [A2] | [A2] | 2 | B12:COBALAMIN DCA:DESULFO-COENZYME A GOL:GLYCEROL | |||
1xrs | [A2B2] | [A2B2] | [A2B2] | 2.8 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN PLP:PYRIDOXAL-5___sq___-PHOSPHATE | |||
1y80 | [A] | [A] | [A] | 1.7 | B1M:CO-5-METHOXYBENZIMIDAZOLYLCOBAMIDE UNX:UNKNOWN ATOM OR ION | |||
2i2x | [A2B2] | [A2B2] | [A2B2] | 2.5 | B13:5-HYDROXYBENZIMIDAZOLYLCOB(III)AMIDE K:POTASSIUM ION ZN:ZINC ION | |||
2req | [AB] | [A2] | [A2] | 2.5 | B12:COBALAMIN COA:COENZYME A | |||
2xij | [A2] | [A2] | [A2] | 1.95 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN BTB:2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL EDO:1,2-ETHANEDIOL SO4:SULFATE ION | |||
2xiq | [A] | [A] | [A] | 1.95 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN MLC:MALONYL-COENZYME A | |||
2yxb | [A] | [A] | [A] | 1.8 | MSE:SELENOMETHIONINE | |||
3bic | [A] | [A] | [A] | 2.6 | CL:CHLORIDE ION | |||
3bul | [A] | [A] | [A] | 2.3 | B12:COBALAMIN | |||
3ezx | [A] | [A] | [A] | 2.56 | HCB:5-HYDROXYBENZIMIDAZOLYLCOBAMIDE MG:MAGNESIUM ION | |||
3iv9 | [A] | [A] | [A] | 3.25 | B12:COBALAMIN | |||
3iva | [A] | [A] | [A] | 2.7 | B12:COBALAMIN NO3:NITRATE ION SAH:S-ADENOSYL-L-HOMOCYSTEINE | |||
3kow | [AB] | [AB] | [AB] | 2.9 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN PLP:PYRIDOXAL-5___sq___-PHOSPHATE | |||
3kox | [A2B2] | [A2B2] | [A2B2] | 2.4 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN Z98:(2S)-2-AMINO-4-{[(1Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}BUTANOIC ACID | |||
3koy | [AB] | [AB] | [AB] | 2.8 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN Z97:(E)-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-ORNITHINE | |||
3koz | [AB] | [AB] | [AB] | 2.8 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN Z97:(E)-N~5~-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE)-L-ORNITHINE | |||
3kp0 | [AB] | [AB] | [AB] | 2.8 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN Z98:(2S)-2-AMINO-4-{[(1Z)-{3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYLIDENE]AMINO}BUTANOIC ACID | |||
3kp1 | [A2B2] | [A2B2] | [A2B2] | 2.01 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN PLP:PYRIDOXAL-5___sq___-PHOSPHATE | |||
3req | [AB] | [A2] | [A2] | 2.7 | ADN:ADENOSINE B12:COBALAMIN | |||
3whp | [A] | [A] | [A] | 2.52 | B12:COBALAMIN | |||
4heh | [A2] | [A2] | [A2] | 2.05 | ||||
4hh0 | [A] | [A] | [A] | 2.6 | CL:CHLORIDE ION FMN:FLAVIN MONONUCLEOTIDE | |||
4hh1 | [A] | [A] | [A] | 3.5 | FMN:FLAVIN MONONUCLEOTIDE | |||
4hh3 | [A2B] | [A2B] | [A2B] | 1.75 | ||||
4jgi | [A] | [A] | [A] | 1.5 | COB:CO-METHYLCOBALAMIN | |||
4q37 | [A2] | [A2] | [A2] | 3.19 | PT:PLATINUM (II) ION | |||
4r3u | [A2B2] | [A2B2] | [A2B2] | 2.5 | 3HC:3-HYDROXYBUTANOYL-COENZYME A 3KK:S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-4-HYDROXY-3-(PHOSPHONOOXY)TETRAHYDROFURAN-2-YL]-3,5,9-TRIHYDROXY-8,8-DIMETHYL-3,5-DIOXIDO-10,14-DIOXO-2,4,6-TRIOXA-11,15-DIAZA-3LAMBDA~5~,5LAMBDA~5~-DIPHOSPHAHEPTADECAN-17-YL} 2-HYDROXY-2-METHYLPROPANETHIOATE 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN | |||
4req | [AB] | [A2] | [A2] | 2.2 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN GOL:GLYCEROL MCA:METHYLMALONYL-COENZYME A SCA:SUCCINYL-COENZYME A | |||
4xc7 | [A2] | [A2] | [A2] | 3.45 | BCO:BUTYRYL COENZYME A TLA:L(+)-TARTARIC ACID | |||
5c8d | [A4] | [A4] | [A4] | 2.8 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN | |||
5c8e | [A4](AB) | [A4](AB) | [A4](AB) | 3.89 | 5AD:5___sq___-DEOXYADENOSINE B12:COBALAMIN | |||
5req | [AB] | [A2] | [A2] | 2.2 | B12:COBALAMIN GOL:GLYCEROL MCD:METHYLMALONYL(CARBADETHIA)-COENZYME A SCD:SUCCINYL(CARBADETHIA)-COENZYME A | |||
6req | [AB] | [A2] | [A2] | 2.2 | 3CP:3-CARBOXYPROPYL-COENZYME A B12:COBALAMIN GOL:GLYCEROL | |||
7req | [AB] | [A2] | [A2] | 2.2 | 2CP:2-CARBOXYPROPYL-COENZYME A B12:COBALAMIN GOL:GLYCEROL |
*Chain Formula of OLIGAMI.
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA
[ ] : Polypeptide - [AB] : Protein, [ab] : Small peptide
( ) : Nucleic acid - (AB) : DNA, (ab) : RNA